Tracking a network of 100,000 mutants

What fundamentally sets a human being apart from every other living creature comes down to differences in DNA sequences — a set of genetically-inherited molecules found in every cell of every organism. These differences have accumulated over millions of years, mainly via random mutations — basically errors in how the DNA was copied. Most of these mutations negatively impact the organism and will likely result in it dying before it has a chance to reproduce. However, some will positively, or neutrally, impact the organism and spread through the population. These mistakes in DNA sequences have resulted in the diversity of life we see around the world today. But many aspects of how these mutations can increase fitness remain poorly understood.

“We’ve managed to experimentally show, for the first time, a concept about mutation and evolution that has previously only been theoretically predicated,” said Prof. Yohei Yokobayashi, who leads to Nucleic Acid Chemistry and Engineering Unit at the Okinawa Institute of Science and Technology Graduate University (OIST). “It’s called a neutral network and it’s thought to be vital for increasing diversity in a population.” This research was published in Nature Communications.

Genes, made up of DNA base pairs, contain the instructions needed to create proteins, and lead to the proper care and maintenance of a cell. For the instructions to be carried out, the DNA must first be transcribed into RNA. Thus, RNA is like a reflection of DNA.

There are four standard base pairs for RNA and DNA. For RNA, these are ‘A’, ‘G’, ‘C’, and ‘U’. Prof. Yokobayashi explained the concept of a neutral network by giving an example of a simplified sequence of RNA bases.

“Say, the RNA sequence AAAAAAA mutates to AAAUAAA, which then mutates to GAAUAAA. The first variant is connected to the second one, which is connected to the third by just one single mutation. If these mutations maintain the same fitness, the organism might survive, and the mutation might be inherited by future generations. This increases the overall diversity, and diversity is essential for a species to adapt to changes in the environment.”

A neutral network is a whole series of base sequences just like this (albeit much longer), where each new sequence, differing by just one base, has roughly the same fitness as the one before and after. Scientists have suspected their existence for some time, but they’re very difficult to prove experimentally. Originally it was predicated that all RNA sequence spaces should have a possibility of harboring a large neutral network, but no one has ever found these large-scale neutral networks in practice.

Source: Read Full Article